| ORF Finding | Protein Family Assignment Please send us .faa file and genomes of selection; see contact at the end of page. | Protein Annotation |
| Do you want to start from a newly sequenced genome sequence? Then you need to begin a genome annotation from scratch. To find ORF using GLIMMER Click. or, you may use GeneMark | If you have two outputs (*.faa and *.ptt files) from the step1, upload them and select a set of genomes at evolutionally close distance to generate protein faminly assignment. Click | Do you already have three outputs (*.faa, *.ptt, and *.tbl files) from the step1 and 2? Now you are ready to annotate target genes. Click |