we are still experiencing
technical problems related with machine upgrade; Apologies!
or click the following links to individual tools sorted by category.
Category : Genome Annotation
- CGAS: Comparative Genome Annotation System
Category : Pairwise Comparison DB
- Manual
- Protein PCDB: Protein-protein pairwise comparison database
- DNA PCDB: Whole genome - whole genome pairwise comparison database
- PTT Viewer & Genome Browser: GenBank PTT file viewer & CGView genome browser
- GBK Viewer: GenBank GBK file viewer
Category : Genome Comparison
- 2D Plot (+ FISH & EGGS): Protein-protein diagonal plotting tool
- mgALIGN: A tool for multiple genome alignment (PLATCOM)
- GAME: A tool for genome alignment by match extension (CANCER)
- COMPAM: A tool for cOmbining pairwise alignment for multiple genomes (PLATCOM)
Category : Gene Neighborhood, Synteny, and Segmental Duplication
- EGGS
- MCGS: A tool for Mining Correlated Gene Sets
- OperonViz-COG: Operon-like gene cluster visualization tool using COG annotation (PLATCOM)
- OperonViz-BAG: Operon-like gene cluster visualization tool using gene clustering result by BAG algorithm (PLATCOM)
Category : Gene Fusion
- FuzFinder: A tool for predicting gene fusion event
Category : Metabolic Pathway
- ComPath: Comparative metabolic pathway analyzer
- MetaPath: Metabolic pathway (PLATCOM)
Category : Clustering Services
- about BAG: A Graph Theoretic Sequence Clustering Algorithm
- about Parameters
- Genome-BAG (CLASSEQ): Genome-scale clustering using BAG (PLATCOM)
- FASTA-BAG: BAG program using FASTA for pairwise comparison of protein sequences (PLATCOM)
- BLAST-BAG: BAG program using BLAST for pairwise coparion of protein and DNA sequences (PLATCOM)